Program blastn blastp blastx tblastn tblastx Database [select database] V. eiseniae EF01-2 [full genome; dna] V. eiseniae EF01-2 [cds; dna] V. eiseniae EF01-2 [orf; pro] A. a. citrulli AAC00-1 [full genome; dna] A. a. citrulli AAC00-1 [cds; dna] A. a. citrulli AAC00-1 [orf; pro] Acidovorax sp. JS42 [full genome; dna] Acidovorax sp. JS42 [cds; dna] Acidovorax sp. JS42 [orf; pro] N. maritimus SMC1 [full genome; dna] N. maritimus SMC1 [cds; dna] N. maritimus SMC1 [orf; pro] V. aporrectodea subsp. tuberculata AT4 [concatenated; dna] V. aporrectodea subsp. tuberculata AT4 [cds; dna] V. aporrectodea subsp. tuberculata AT4 [orf; pro] D. vulgaris DP4 [genome; dna] D. vulgaris DP4 [cds; dna] D. vulgaris DP4 [cds; pro] D. alaskensis G20 [cds; pro] V. eiseniae EF01-2 [cds - JGI; dna] A. a. citrulli AAC00-1 [cds - JGI; dna] Acidovorax sp. JS42 [cds - JGI; dna]
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Expect 0.0001 0.01 1 10 100 1000 Matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45 Perform ungapped alignment
Query Genetic Codes (blastx only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Database Genetic Codes (tblast[nx] only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Frame shift penalty for blastx 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 50 1000 No OOF
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